So... I logged in a couple days in a row now to notice that my team was not as I had left it. The most recent example: I had a Snorlax in my 5 spot and a ShinyHo-Oh in my 6... Now it's showing up as ShinyHo-Oh is in my 5 and Snorlax is back in my box. However, other than changing my lineup back to what it normally is after this occurs, I don't really do anything with my box. I definitely do not deposit my Snorlax, so I don't know why it's happening. Thoughts?

i've had the same problem, like.. it wont let me have 6 pokes in my party? and then as im battling it will make a double of one of my pokemon. i just decided to post this here so i didnt make a double of this topic.

did you recently loan a pokemon? if so, just press the deposit slots 2-6 in the your pokemon section, then put your team back.
don't know what do do if that doesn't work...

Try sending slots 2-6 back to your box ;3